Galaxy-P User Guide¶
- Introduction
- Galaxy-P 101 - Building Up and Using a Proteomics Workflow
- What Are We Trying to Do?
- Setting Up Your Galaxy-P Account
- Organizing Your Windows
- Loading a Search Database
- Using Protein Database Downloader
- Using the Database Merge Tool
- Creating a Decoy Database
- Peaklist Processing
- X! Tandem Search
- Peptide Prophet Processing of X! Tandem Search
- Converting ProtXML to a Table
- False Discovery Rate Analysis
- Understanding Galaxy Histories
- Converting Histories to Workflows
- Applying Workflows to Your Data
- FTP
- Multiple File Datasets
- A Simple Worklfow using peptide-shaker