Galaxy-P User Guide

• Introduction
• Galaxy-P 101 - Building Up and Using a Proteomics Workflow
  • What Are We Trying to Do?
  • Setting Up Your Galaxy-P Account
  • Organizing Your Windows
  • Loading a Search Database
  • Using Protein Database Downloader
  • Using the Database Merge Tool
  • Creating a Decoy Database
  • Peaklist Processing
  • X! Tandem Search
  • Peptide Prophet Processing of X! Tandem Search
  • Converting ProtXML to a Table
  • False Discovery Rate Analysis
  • Understanding Galaxy Histories
  • Converting Histories to Workflows
  • Applying Workflows to Your Data
• FTP
  • Uploading Files
  • See Also
• Multiple File Datasets
  • Introduction
  • Creating a Multiple File Dataset
• A Simple Worklfow using peptide-shaker

Indices and tables

• Index
• Module Index
• Search Page